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encyclopedia of Rare Disease Annotation for Precision Medicine



   portal vein thrombosis
  

Disease ID 897
Disease portal vein thrombosis
Definition
The formation of a blood clot (thrombus) in the portal vein.
Synonym
blood clot in portal vein
deep vein thrombosis of portal vein
portal thrombosis
portal thrombosis vein
portal vein thrombosis (disorder)
pvt - portal vein thrombosis
pylethrombosis
thrombosis portal vein
thrombosis, portal vein
Orphanet
DOID
ICD10
UMLS
C0155773
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:67)
C0155773  |  portal vein thrombosis  |  69
C0019204  |  hepatocellular carcinoma  |  24
C0023890  |  cirrhosis  |  21
C0020541  |  portal hypertension  |  14
C0023890  |  liver cirrhosis  |  12
C0020538  |  hypertension  |  12
C0863194  |  resectable hepatocellular carcinoma  |  4
C0023895  |  liver disease  |  4
C0042345  |  varices  |  3
C0040053  |  thrombosis  |  3
C0022116  |  ischemia  |  2
C0008325  |  cholecystitis  |  2
C0042769  |  virus infection  |  2
C0023903  |  liver cancer  |  2
C0398623  |  hypercoagulability  |  2
C0041296  |  tuberculosis  |  2
C0018920  |  cavernoma  |  2
C0014867  |  esophageal varices  |  2
C0001339  |  acute pancreatitis  |  2
C0041325  |  peritoneal tuberculosis  |  1
C0009324  |  ulcerative colitis  |  1
C0023473  |  chronic myeloid leukemia  |  1
C0008313  |  sclerosing cholangitis  |  1
C0003857  |  arteriovenous malformation  |  1
C0235974  |  carcinoma of the pancreas  |  1
C0085693  |  acute appendicitis  |  1
C0021831  |  bowel disease  |  1
C0030305  |  pancreatitis  |  1
C0021390  |  inflammatory bowel disease  |  1
C0398625  |  protein c deficiency  |  1
C1261473  |  sarcoma  |  1
C0023890  |  hepatic cirrhosis  |  1
C0013502  |  echinococcosis  |  1
C0007134  |  renal cell carcinoma  |  1
C0027022  |  myeloproliferative disorder  |  1
C0040034  |  thrombocytopenia  |  1
C0033860  |  psoriasis  |  1
C0034152  |  henoch schonlein purpura  |  1
C0023470  |  myeloid leukemia  |  1
C0281361  |  adenocarcinoma of the pancreas  |  1
C0032461  |  polycythemia  |  1
C0039730  |  thalassemia  |  1
C0032463  |  polycythemia rubra vera  |  1
C0085278  |  antiphospholipid syndrome  |  1
C0019158  |  hepatitis  |  1
C0024299  |  lymphoma  |  1
C0016977  |  biliary disease  |  1
C0948954  |  alveolar echinococcosis  |  1
C0024305  |  non-hodgkin's lymphoma  |  1
C0019069  |  hemophilia  |  1
C0553580  |  ewing's sarcoma  |  1
C0085278  |  anti-phospholipid syndrome  |  1
C0014867  |  oesophageal varices  |  1
C0024623  |  gastric cancer  |  1
C0023895  |  liver diseases  |  1
C0019829  |  hodgkin's lymphoma  |  1
C0920156  |  biliary tract infection  |  1
C0041408  |  turner's syndrome  |  1
C0023903  |  liver tumor  |  1
C0003615  |  appendicitis  |  1
C0005411  |  biliary atresia  |  1
C0008311  |  cholangitis  |  1
C0005283  |  beta thalassemia  |  1
C0494165  |  liver metastases  |  1
C0343525  |  lemierre syndrome  |  1
C0019204  |  hepatoma  |  1
C0162529  |  ischemic colitis  |  1
Curated Gene(Waiting for update.)
Inferring Gene(Waiting for update.)
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:38)
174  |  AFP  |  5.289  |  DISEASES
811  |  CALR  |  1.065  |  DISEASES
911  |  CD1C  |  1.443  |  DISEASES
966  |  CD59  |  1.614  |  DISEASES
192668  |  CYS1  |  1.424  |  DISEASES
8813  |  DPM1  |  3.643  |  DISEASES
3266  |  ERAS  |  1.773  |  DISEASES
51466  |  EVL  |  1.348  |  DISEASES
2152  |  F3  |  2.66  |  DISEASES
2153  |  F5  |  3.115  |  DISEASES
2155  |  F7  |  2.481  |  DISEASES
2157  |  F8  |  2.368  |  DISEASES
388698  |  FLG2  |  1.694  |  DISEASES
2316  |  FLNA  |  1.052  |  DISEASES
728441  |  GGT2  |  1.299  |  DISEASES
51280  |  GOLM1  |  1.199  |  DISEASES
2719  |  GPC3  |  1.174  |  DISEASES
3043  |  HBB  |  2.137  |  DISEASES
3112  |  HLA-DOB  |  1.378  |  DISEASES
3440  |  IFNA2  |  1.414  |  DISEASES
133396  |  IL31RA  |  1.803  |  DISEASES
3572  |  IL6ST  |  1.359  |  DISEASES
3717  |  JAK2  |  4.005  |  DISEASES
4352  |  MPL  |  1.271  |  DISEASES
9112  |  MTA1  |  1.087  |  DISEASES
4524  |  MTHFR  |  4.006  |  DISEASES
143662  |  MUC15  |  2.281  |  DISEASES
57649  |  PHF12  |  1.729  |  DISEASES
5817  |  PVR  |  2.66  |  DISEASES
5820  |  PVT1  |  1.257  |  DISEASES
462  |  SERPINC1  |  4.85  |  DISEASES
788  |  SLC25A20  |  1.504  |  DISEASES
23583  |  SMUG1  |  1.874  |  DISEASES
94161  |  SNORD46  |  2.009  |  DISEASES
50945  |  TBX22  |  1.529  |  DISEASES
7056  |  THBD  |  1.719  |  DISEASES
7422  |  VEGFA  |  1.115  |  DISEASES
79001  |  VKORC1  |  1.237  |  DISEASES
Locus(Waiting for update.)
Disease ID 897
Disease portal vein thrombosis
Integrated Phenotype(Waiting for update.)
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:46)
HP:0030242  |  Blood clot in portal vein  |  87
HP:0001394  |  Hepatic cirrhosis  |  24
HP:0001402  |  Hepatocellular carcinoma  |  24
HP:0030731  |  Carcinoma  |  21
HP:0001409  |  Portal hypertension  |  18
HP:0000822  |  Hypertension  |  15
HP:0002664  |  Neoplasia  |  5
HP:0001541  |  Ascites  |  3
HP:0002896  |  Liver cancer  |  3
HP:0100523  |  Hepatic abscess  |  2
HP:0001744  |  Splenomegaly  |  2
HP:0001735  |  Acute pancreatitis  |  2
HP:0100724  |  Hypercoagulability  |  2
HP:0001733  |  Pancreatic inflammation  |  1
HP:0200123  |  Chronic liver inflammation  |  1
HP:0100242  |  Sarcoma  |  1
HP:0012254  |  Ewing's sarcoma  |  1
HP:0100279  |  Ulcerative colitis  |  1
HP:0001082  |  Cholecystitis  |  1
HP:0012721  |  Venous malformations  |  1
HP:0001298  |  Encephalopathy  |  1
HP:0012189  |  Hodgkin disease  |  1
HP:0001399  |  Liver failure  |  1
HP:0012115  |  Liver inflammation  |  1
HP:0100762  |  Hemobilia  |  1
HP:0004941  |  Extrahepatic portal hypertension  |  1
HP:0005584  |  Renal cell carcinoma  |  1
HP:0003765  |  Psoriasis  |  1
HP:0012126  |  Gastric cancer  |  1
HP:0012281  |  Chylous ascites  |  1
HP:0005506  |  Chronic myeloid leukemia  |  1
HP:0002013  |  Emesis  |  1
HP:0100806  |  Sepsis  |  1
HP:0100026  |  Arteriovenous malformation  |  1
HP:0005543  |  Reduced protein C activity  |  1
HP:0002665  |  Lymphoma  |  1
HP:0012324  |  Myeloid leukemia  |  1
HP:0030151  |  Cholangitis  |  1
HP:0001397  |  Hepatic steatosis  |  1
HP:0001636  |  Tetrology of fallot  |  1
HP:0011901  |  Dysfibrinogenemia  |  1
HP:0001873  |  Low platelet count  |  1
HP:0001410  |  Decreased liver function  |  1
HP:0005547  |  Myeloproliferative disorder  |  1
HP:0001901  |  Abnormally shaped erythrocytes  |  1
HP:0012531  |  Pain  |  1
Disease ID 897
Disease portal vein thrombosis
Manually Symptom
UMLS  | Name(Total Manually Symptoms:26)
C2364133  |  infection
C1963135  |  hepatic necrosis
C1839611  |  n syndrome
C1512411  |  hepatocellular carcinoma
C0947622  |  gallbladder stones
C0863194  |  resectable hepatocellular carcinoma
C0856761  |  budd chiari syndrome
C0580178  |  duodenal varices
C0345907  |  hepatic angiosarcoma
C0281361  |  pancreatic adenocarcinoma
C0272414  |  wandering spleen
C0265029  |  hepatic portal vein obstruction
C0232493  |  epigastric pain
C0156192  |  pylephlebitis
C0155789  |  bleeding esophageal varices
C0042345  |  varicose veins
C0042345  |  varices
C0041313  |  hepatic tuberculosis
C0040038  |  thromboembolism
C0033626  |  protein deficiency
C0027022  |  myeloproliferative disorders
C0023891  |  alcoholic liver cirrhosis
C0021308  |  infarction
C0020541  |  portal hypertension
C0019080  |  hemorrhage
C0017181  |  gastrointestinal hemorrhage
Text Mined Symptom
UMLS | Name | Sentences' Count(Total Symptoms:8)
C0019204  |  hepatocellular carcinoma  |  23
C0020541  |  portal hypertension  |  18
C0863194  |  resectable hepatocellular carcinoma  |  3
C0009450  |  infection  |  2
C0042345  |  varices  |  2
C0021308  |  infarction  |  1
C0014867  |  esophageal varices  |  1
C0034192  |  pylephlebitis  |  1
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:15)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs3743251247582413480IGF1Rumls:C0155773BeFreeWe found A/A genotype at rs3743251 of IGF1R was negatively associated with HBV related HCC [odds ratio (OR) = 0.38, 95% confidence interval (CI) = 0.20-0.72, P = 0.037]; A/G genotype decreased the risk of portal vein thrombosis (OR = 0.38, 95%CI = 0.18-0.82, P = 0.01).0.0002714422014IGF1R1598960900GA
rs386626619190463163717JAK2umls:C0155773BeFreeThe JAK2(V617F) tyrosine kinase mutation identifies clinically latent myeloproliferative disorders in patients presenting with hepatic or portal vein thrombosis.0.0021715352008NANANANANA
rs386626619218934423717JAK2umls:C0155773BeFreeIn this group, 4 out of 7 of the patients with PVT carried the JAK2 V617F mutation with or without overt MPD.0.0021715352011NANANANANA
rs386626619176875553717JAK2umls:C0155773BeFreeJAK2(V617F) positive early stage myeloproliferative disease (essential thrombocythemia) as the cause of portal vein thrombosis in two middle-aged women: therapeutic implications in view of the literature.0.0021715352007NANANANANA
rs386626619183967503717JAK2umls:C0155773BeFreeThe search of the V617F mutation of the Janus Kinase 2 gene has to be performed in all cases of portal vein thrombosis of unknown origin.0.0021715352008NANANANANA
rs386626619183287923717JAK2umls:C0155773BeFreeThe JAK2 V617F point mutation was found in 3 patients with extrahepatic portal vein thrombosis who had multiple thrombotic events but did not fulfill the traditional diagnostic criteria for MPDs.0.0021715352008NANANANANA
rs386626619256982703717JAK2umls:C0155773BeFreeDiagnostic value of the JAK2 V617F mutation for latent chronic myeloproliferative disorders in patients with Budd-Chiari syndrome and/or portal vein thrombosis.0.0021715352015NANANANANA
rs386626619226843493717JAK2umls:C0155773BeFreeThe aim of this study was to describe the prevalence of main hereditary thrombophilias, Janus kinase 2 (JAK2) V617F mutation, antiphospholipid antibody syndrome (APS), and hyperhomocysteinemia in Brazilian children and adolescents diagnosed with portal vein thrombosis (PVT) without associated hepatic disease.0.0021715352012NANANANANA
rs77375493183967503717JAK2umls:C0155773BeFreeThe search of the V617F mutation of the Janus Kinase 2 gene has to be performed in all cases of portal vein thrombosis of unknown origin.0.0021715352008JAK2;INSL695073770GA,T
rs77375493226843493717JAK2umls:C0155773BeFreeThe aim of this study was to describe the prevalence of main hereditary thrombophilias, Janus kinase 2 (JAK2) V617F mutation, antiphospholipid antibody syndrome (APS), and hyperhomocysteinemia in Brazilian children and adolescents diagnosed with portal vein thrombosis (PVT) without associated hepatic disease.0.0021715352012JAK2;INSL695073770GA,T
rs77375493218934423717JAK2umls:C0155773BeFreeIn this group, 4 out of 7 of the patients with PVT carried the JAK2 V617F mutation with or without overt MPD.0.0021715352011JAK2;INSL695073770GA,T
rs77375493190463163717JAK2umls:C0155773BeFreeThe JAK2(V617F) tyrosine kinase mutation identifies clinically latent myeloproliferative disorders in patients presenting with hepatic or portal vein thrombosis.0.0021715352008JAK2;INSL695073770GA,T
rs77375493183287923717JAK2umls:C0155773BeFreeThe JAK2 V617F point mutation was found in 3 patients with extrahepatic portal vein thrombosis who had multiple thrombotic events but did not fulfill the traditional diagnostic criteria for MPDs.0.0021715352008JAK2;INSL695073770GA,T
rs77375493176875553717JAK2umls:C0155773BeFreeJAK2(V617F) positive early stage myeloproliferative disease (essential thrombocythemia) as the cause of portal vein thrombosis in two middle-aged women: therapeutic implications in view of the literature.0.0021715352007JAK2;INSL695073770GA,T
rs77375493256982703717JAK2umls:C0155773BeFreeDiagnostic value of the JAK2 V617F mutation for latent chronic myeloproliferative disorders in patients with Budd-Chiari syndrome and/or portal vein thrombosis.0.0021715352015JAK2;INSL695073770GA,T
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:0)
(Waiting for update.)
Mapped by homologous gene(Total Items:0)
(Waiting for update.)
Disease ID 897
Disease portal vein thrombosis
Case(Waiting for update.)